Collections
Wednesday, November 20, 2024OPIOIDS

Introducing OIDA Data Products

The Opioid Industry Documents Archive (OIDA), a collaborative undertaking between the University of California, San Francisco and Johns Hopkins University, invites you to explore our newest resource, OIDA Data Products—tools that can facilitate and inspire research.

We created these datasets to provide access points for data analysis of OIDA documents. Researchers get a running start on exploring data, benefiting from our work to curate and deduplicate documents, provide a glossary of spreadsheet column names, and more. Users can craft queries online or select a subset of the data for download, allowing them to interact with OIDA data before dedicating time and resources to a full analysis.

“OIDA Data Products reduces some of the barriers to working with OIDA data, helping researchers get a sense of the many gems hidden among OIDA’s millions of documents,” said Kevin Hawkins, OIDA program director for Johns Hopkins University. “Working with data wranglers, statisticians and developers, we hope these data products will facilitate new research helping us to better understand the opioid crisis.”

Current OIDA Data Products include:

The webpage will grow as OIDA continues to identify and develop new OIDA Data Products.

OIDA was launched by UCSF and Johns Hopkins in March 2021 as a free public resource. The digital repository includes publicly disclosed documents arising from litigation brought against opioid manufacturers, distributors, pharmacies and consultants by local and state governments and tribal communities.

    

The Archive contains more than 17.9 million pages in 3.8 million documents and is expected to continue to grow for years to come. Documents are full-text searchable and include an array of relevant materials from many different companies, including emails, memos, presentations, sales reports, budgets, audit reports, Drug Enforcement Administration briefings, meeting agendas and minutes, expert witness reports and trial transcripts. 

  

OIDA may be of use to many different parties, including individuals and communities harmed by the opioid crisis, as well as the media, health care practitioners, students, lawyers, and researchers. Major news outlets such as the Washington Post and New York Times and academic resources like Health Affairs Scholar and the American Journal of Public Health have published investigative reports and analysis using OIDA documents.

   

To learn more and access OIDA Data Products, visit https://data.oida-resources.jhu.edu/.

Monday, November 11, 2024OPIOIDS

Behind the Scenes of the OIDA Image Collection

The team behind the UCSF-JHU Opioid Industry Documents Archive was pleased to release its latest OIDA resource in late October: the OIDA Image Collection. This incredible new resource highlights images extracted from documents created by the opioid industry. Many of these documents were designed for internal company audiences and board members, while others were targeted to prescribers and consumers. The images provide insight into corporate practices that shaped the opioid crisis.

The OIDA Image Collection currently features 3,907 images extracted from PowerPoint and Excel documents in OIDA. How did we select these images? And how did we create metadata like titles, descriptions, and categories to help you browse and find images of interest? It was a complicated process involving a mix of automated and manual steps.

Selecting the images

First, we processed all PowerPoint and Excel documents in OIDA as of December 2023 to remove every image embedded in these documents – roughly 4 million images!

Second, we ran some code that removed:

  • Images whose original filename included “thumb” (likely indicating a low-resolution thumbnail of little value)
  • images with a width or height of less than 200 pixels (likely too small to be useful)
  • images with an entropy score of less than 6.0 (likely indicating a gradient horizontal rule, background image, or other meaningless decoration)

This yielded roughly 100,000 images.

Third, we deduplicated the images found, tracking the source documents so that in the OIDA Image Collection website we could link to all documents in the archive where the image was found. This step left us with just 13,688 images. This dramatic drop is due in part to the fact that OIDA often contains more than one copy of the same email attachment and each version of the document circulated by company employees.

Fourth, our metadata librarian reviewed these 13,688 images to decide which to keep according to our subjective criteria for inclusion. The criteria were refined over time with input from a number of OIDA team members, but in the end, we decided to discard the following:

  • purely decorative images
  • bare logos and branding templates
  • headshots
  • text-heavy images
  • computer screenshots
  • illegible or meaningless images
  • sexually explicit images

Finally, we were left with the 3,907 images that we’ve made available in the collection.

Describing the images

We used a mix of AI models and human expert review to generate metadata to help users browse and search for images.

  • Title: So far we have only been creating these by hand, so not all images have a Title at this time. We are considering using AI to generate titles in the future.
  • Description: We generated these using Microsoft’s Florence-2 AI model, and our metadata librarian, with help from our collection archivist, is reviewing these for typos, nonsensical statements, inaccuracies, and more. When we make small corrections, we leave them labeled with the “AI” badge in the website interface, but if we rewrite from scratch, we remove the AI badge.
  • Type: We generated these using OpenAI’s CLIP AI model, but our metadata librarian reviewed these and made corrections to about 40% of the AI-assigned values.
  • Category: Our metadata librarian assigned these by hand.

Making the images available online

The OIDA Image Collection website runs on an instance of WordPress, with the images themselves served from a content delivery network (CDN) to increase performance of the site and ease the process of updating the website. We hired Mission Media, a web agency familiar with creating polished websites that follow university branding requirements, to build the website.

The website’s search feature uses not just the metadata fields but also the text within the image, which we generated using optical character recognition (OCR).

Next steps

AI models are rapidly developing, so we expect to get better results when we use them in the future. One way you can help us with that is by participating in our collaboration with Hugging Face to test multiple AI models for writing image descriptions (captions). While no model is perfect, we want to know which is our best starting point for generating descriptions for images in the future.

We are also considering adding new features to the website, like allowing user corrections and annotations and improving the “related images” feature to be based on the image files themselves rather than just the metadata. And we might adjust the entropy score used at the filtering stage to be less aggressive in removing images before human review.

Over the past few months, the OIDA team has added nearly 600,000 documents from Teva to the archive, with many more to come from this and other companies. We also plan to expand our image detection and classification techniques beyond PowerPoint and Excel documents to the many other file formats found in OIDA. So we hope to mine the archive for many more images to add to the OIDA Image Collection, providing an even richer view on how opioids and their effects were represented or misrepresented to patients and prescribers, and more broadly how the drug crisis was imagined and perpetuated by the industry while it unfolded.

Thursday, October 31, 2024OPIOIDSTOBACCO

October 2024 Updates - New Opioid and JUUL Documents

Collection Updates


Opioid Industry Documents Archive - Teva and Allergan Documents

OIDA staff added 218,267 documents to its newest collection, the Teva and Allergan Documents. This batch brings the collection to more than 588,000 documents and includes sales training presentations, interviews with prescribers, reports on focus groups, product communications, and more.

The Teva and Allergan collection will encompass about 1.9 million documents when complete. Processed documents are being made public on a rolling basis with monthly releases expected from 2024-2026.


Announcing the OIDA Image Collection and How You Can Help!

Screenshot of OIDA Image Collection browse view

We are proud to introduce the OIDA Image Collection, a website created to highlight images within the OIDA documents. Images provide unique entry points to understand a visual narrative of the opioid industry and gain insight into harmful corporate and marketing practices that contributed to the opioid crisis. Researchers can browse, limit their results by filters, and search by keyword. By viewing the source documents, you can see the images in their original context.

The OIDA team used artificial intelligence (AI) to write captions for highlighted images within the OIDA Image Collection but we could use your help! We have generated captions using two different AI models and need to decide which AI-generated caption is better for use in the OIDA Image Collection. Thanks to support from Hugging Face, a platform for collaborating on models and datasets for machine learning, and its Argilla data annotation tool, we have created a handy interface for voting on the quality of image captions. To help us out, you’ll just need to create a free Hugging Face account.

Your image labeling efforts will contribute to an open preference dataset, crucial for "steering" AI models towards generating more useful outputs in specific domains. Please email opioidarchive@jh.edu with any questions.


Tobacco Industry Documents Archive - Juul Labs Collection

117K new documents were posted to the Juul Labs Collection today! This new batch of documents includes social media presence reports, marketing campaigns, focus group findings, product design, and more.

In partnership with the University of North Carolina at Chapel Hill Libraries, the IDL continues to process and make available documents subject to public disclosure under JUUL Labs’s 2021 settlement with North Carolina.

2019 SRNT slide deck.

Education & Research Updates

World Digital Preservation Day – 7 November 2024


Each year, the Digital Preservation Coalition promotes World Digital Preservation Day, which falls on the first Thursday of November.

In line with this year’s theme of 'Preserving Our Digital Content: Celebrating Communities,' the UC Libraries’ Digital Preservation Working Group (DPWG) is hosting a community-building Open House event which presents an opportunity for everyone to learn more about digital preservation while also sharing their own stories and experiences in this space.

Please join the event online on November 7, 2024 from 11AM – 12PM where you’ll hear digital preservation stories from us at the UCSF Industry Documents Library as well as the UC & Jepson Herbaria.

Register via Zoom.

Annual Tobacco and Other Industry Documents Workshop: Recording Now Available!


IDL and the UCSF Center for Tobacco Research and Education (CTCRE) held the "Annual Tobacco and Other Industry Documents Workshop" virtually on October 8th from 9 am-12:15 pm PT.

If you didn't have a chance to join us, the event recording is now available


New Papers and Publications


Thursday, October 31, 2024OPIOIDS

OIDA Collaboration with Hugging Face on AI Captioning

The recently launched OIDA Image Collection highlights images found within OIDA and includes a description of each image, but it would have taken an enormous amount of time to write a description for each image. Therefore, the OIDA team used artificial intelligence (AI) to write captions for these images to make them more discoverable in the OIDA Image Collection.

But we need your help! We have generated captions using two different AI models and need to decide which AI-generated caption is better for use in the OIDA Image Collection. Thanks to support from Hugging Face, a platform for collaborating on models and datasets for machine learning, and its Argilla data annotation tool, we have created a handy interface for voting on the quality of image captions. To help us out, you’ll just need to create a free Hugging Face account.

Your image labeling efforts will contribute to an open preference dataset, crucial for "steering" AI models towards generating more useful outputs in specific domains.

“Projects like this ensure AI becomes useful for a wider range of audiences, aligning with Hugging Face’s mission to democratize machine learning and make AI more accessible and impactful across diverse fields,” said Daniel van Strien, machine learning librarian at Hugging Face and OIDA National Advisory Committee member.

Vision Language Models (VLMs) represent a cutting-edge field in AI, and your contributions will enable the development of more specialized models for important applications such as captioning large archival image collections. By participating, you're not just helping OIDA – you're shaping the future of AI to better serve specialized communities and enhance visual information accessibility for a wider range of document types.

Sample OIDA image with AI-generated caption options
Monday, October 28, 2024OPIOIDS

UCSF-JHU Opioid Industry Documents Archive Launches OIDA Image Collection

The Opioid Industry Documents Archive (OIDA), a collaborative undertaking between the University of California, San Francisco and Johns Hopkins University, announces the launch of the OIDA Image Collection, a website created to highlight images within the documents, providing a new way to explore the Archive that will generate fundamental new knowledge about the U.S. opioid epidemic.

The OIDA Image Collection highlights images extracted from publicly disclosed industry documents—many originally created for internal company audiences and board members, others targeted to prescribers and consumers. These images provide insight into corporate practices that shaped the opioid crisis.

“The images in this collection offer unique insight into the strategies the pharmaceutical industry used to expand its reach and present opioid products as a safe and effective solution for nearly all forms of pain,” said Cecília Tomori, PhD, an associate professor at the Johns Hopkins School of Nursing, with a joint appointment in the Department of Population, Family and Reproductive Health at the Johns Hopkins Bloomberg School of Public Health. “The images played a powerful role in efforts to mislead health professionals and the public as the industry sought ever-increasing profits.”

Computer scientists working with OIDA archivists and librarians extracted images embedded in Microsoft Office documents and then filtered them based on properties such as size and color variation. The team removed exact duplicates and then manually sorted images into high-level categories, such as Business Strategy, Sales and Marketing, and Pain Management. The processes of extracting, filtering and deduplicating images were carried out using SciServer with support from the Johns Hopkins Institute for Data-Intensive Engineering and Science.

Using the OIDA Image Collection, researchers can browse compelling images that tell stories on their own, and they may continue on to investigate the source documents to study the broader context. All audiences, including those directly impacted by epidemic, can use the OIDA Image Collection to interact with OIDA in more visual and accessible way.

OIDA was launched by UCSF and Johns Hopkins in March 2021 as a free public resource. The digital repository includes publicly disclosed documents arising from litigation brought against opioid manufacturers, distributors, pharmacies and consultants by local and state governments and tribal communities.

The Archive contains more than 16.2 million pages in 3.5 million documents and is expected to continue to grow for years to come. Documents are full-text searchable and include an array of relevant materials from many different companies, including emails, memos, presentations, sales reports, budgets, audit reports, Drug Enforcement Administration briefings, meeting agendas and minutes, expert witness reports and trial transcripts.

OIDA may be of use to many different parties, including individuals and communities harmed by the opioid crisis, as well as the media, health care practitioners, students, lawyers, and researchers. Major news outlets such as the Washington Post and New York Times and academic resources like Health Affairs Scholar and the American Journal of Public Health have published investigative reports and analysis using OIDA documents.

To learn more and access the OIDA Image Collection, visit images.oida-resources.jhu.edu/.

Screenshot of the OIDA Image Collection browse view
Monday, October 21, 2024CHEMICALDRUGFOODFOSSILFUELOPIOIDSTOBACCO

2024 Undergraduate Summer Fellow: Gordon Lichtstein

The UCSF Industry Documents Library is pleased to highlight the work of 2024 Summer Fellow Gordon Lichtstein. Gordon is an incoming MIT student with an interest in the intersection of computer science and linguistics in NLP and the application of NLP for the betterment of humanity such as in environmental sustainability or the digital humanities.

Over the course of the 8-week internship, Gordon crafted and completed four distinct projects that leverage natural language processing and data science within the context of our JUUL Labs Collection and the broader IDL. Project One investigates the optical character recognition (OCR) accuracy of low-quality and handwritten documents in the absence of ground truth data. Project Two explores the implementation of embedding search algorithms and visualizations aimed at enhancing the relevance of document recommendations for users. Project Three employs txt-ferret to conduct a thorough scan of a substantial corpus of industry documents to identify sensitive information, including credit card numbers. Finally, Project Four assesses the biases present in large language model (LLM) summarization through the lens of sentiment analysis.

Read Gordon's entire report and reflection via eScholarship.

The IDL staff is deeply appreciative of Gordon's thoughtful and comprehensive contributions, as well as his engagement in team meetings and Amazon Web Services workshops. His projects and use of NLP techniques with our document corpus have greatly enriched our understanding.

Thursday, September 26, 2024OPIOIDSTOBACCO

New Teva and JUUL Labs Documents Uploaded

Collection Updates:


Opioid Industry Documents Archive:

Teva and Allergan Documents

OIDA staff added 123K documents to its newest collection, the Teva and Allergan Documents. This batch brings the collection to more than 370,000 documents and includes sales training presentations, interviews with prescribers on Fentora message testing, reports on focus group responses to REMS messaging, and more.

The Teva and Allergan collection will encompass about 1.9 million documents when complete. Processed documents are being made public on a rolling basis with monthly releases expected from 2024-2026.


Truth Tobacco Industry Documents:

JUUL Labs Documents

213,762 new documents were posted to the JUUL Labs Collection today!
This new batch of documents includes social media presence reports, marketing campaigns, focus group findings, product design, and more. In partnership with the University of North Carolina at Chapel Hill Libraries, the IDL continues to process and make available documents subject to public disclosure under JUUL Labs’s 2021 settlement with North Carolina.

Above image: 2019 JUUL Early Primary State Focus Group Findings slide deck.

Education and Research Updates

Opioid Crisis Community Archive

The UCSF Library and five community-based partner organizations have received a $97,000 grant from the California State Library to co-create the Opioid Crisis Community Archive (OCCA).

This archive, the first of its kind, will document the impact of the opioid crisis on communities and community-based service organizations in Northern California. While OIDA documents illuminate the corporate and business realities of the opioid crisis, the OCCA aims to close the gap in information about the community response. A key output of the OCCA project is the inclusion of underrepresented voices in the historical record to curate the archive. Learn more: California State Archive Funds Opioid Crisis Community Archive


Annual Tobacco and Other Industry Documents Workshop
IDL and the UCSF Center for Tobacco Research and Education (CTCRE) will hold the "Annual Tobacco and Other Industry Documents Workshop" virtually on October 8th from 9 am-12:15 pm PT.

This event offers an in-depth exploration of our Industry Documents Library and our new JUUL Labs documents collection and features talks from experts on how document collections can be used for teaching, research, and public health advocacy. Please join us!
Register at: https://tiny.ucsf.edu/TIDWS2024


Digital Health Humanities at UCSF

New to the 'Archives as Data' world? The DHH program is here to help! The UCSF DHH now offers virtual courses to help with digital humanities projects, provide 1:1 research consultations, and created a new 'Archives as Data' research guide which is a centralized resource containing descriptions of datasets that have been prepared from UCSF archival collections, including the following:

  • No More Silence initiative and AIDS History Project collections
  • Industry Documents Library data tools
  • UCSF University Publications in HathiTrust
  • COVID Tracking Project open datasets

Learn all about our Digital Health Humanities program and the newly launched NEH-funded Advancing Digital Health Humanities Institute.

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